Installation
============

From PyPI
---------

Install the latest stable version from PyPI:

.. code-block:: bash

   pip install lymphoseq

Development Installation
------------------------

For development, clone the repository and install in editable mode:

.. code-block:: bash

   git clone https://github.com/shashidhar22/lymphoseq.git
   cd lymphoseq
   pip install -e ".[dev]"

Requirements
------------

LymphoSeq requires Python 3.8 or higher and depends on the following packages:

- pandas >= 1.5.0
- numpy >= 1.21.0
- polars >= 0.19.0
- pyarrow >= 10.0.0
- dask[dataframe] >= 2023.1.0
- pydantic >= 2.0.0
- typer >= 0.9.0
- rich >= 13.0.0
- plotly >= 5.15.0
- seaborn >= 0.12.0
- matplotlib >= 3.6.0
- scipy >= 1.9.0
- scikit-learn >= 1.1.0
- biopython >= 1.80
- networkx >= 2.8
- pyyaml >= 6.0