Index

C

clonal_relatedness() (in module lymphoseq) clonality() (in module lymphoseq) clone_track() (in module lymphoseq)

common_seqs() (in module lymphoseq) common_seqs_venn() (in module lymphoseq) common_sequences() (in module lymphoseq)

D

differential_abundance() (in module lymphoseq)

diversity_metrics() (in module lymphoseq)

G

gene_freq() (in module lymphoseq)

gene_pair_freq() (in module lymphoseq) get_vdjdb_stats() (in module lymphoseq)

L

lymphoseq module

M

merge_chains() (in module lymphoseq) mergeSeqs() (in module lymphoseq)

module lymphoseq

P

plot_clonality() (in module lymphoseq) plot_common_seqs() (in module lymphoseq) plot_differential() (in module lymphoseq) plot_diversity() (in module lymphoseq) plot_gene_usage() (in module lymphoseq)

plot_lorenz_curve() (in module lymphoseq) plot_rarefaction() (in module lymphoseq) plot_similarity() (in module lymphoseq) plot_top_seqs() (in module lymphoseq) productive_seq() (in module lymphoseq)

R

rarefaction_curve() (in module lymphoseq) read_10x() (in module lymphoseq)

read_immunoseq() (in module lymphoseq) read_mixcr() (in module lymphoseq) remove_seq() (in module lymphoseq)

S

search_db() (in module lymphoseq) search_published() (in module lymphoseq)

searchSeq() (in module lymphoseq) split_chains() (in module lymphoseq)

T

top_seqs() (in module lymphoseq)

U

unique_seqs() (in module lymphoseq)