Installation

From PyPI

Install the latest stable version from PyPI:

pip install lymphoseq

Development Installation

For development, clone the repository and install in editable mode:

git clone https://github.com/shashidhar22/lymphoseq.git
cd lymphoseq
pip install -e ".[dev]"

Requirements

LymphoSeq requires Python 3.8 or higher and depends on the following packages:

• pandas >= 1.5.0

• numpy >= 1.21.0

• polars >= 0.19.0

• pyarrow >= 10.0.0

• dask[dataframe] >= 2023.1.0

• pydantic >= 2.0.0

• typer >= 0.9.0

• rich >= 13.0.0

• plotly >= 5.15.0

• seaborn >= 0.12.0

• matplotlib >= 3.6.0

• scipy >= 1.9.0

• scikit-learn >= 1.1.0

• biopython >= 1.80

• networkx >= 2.8

• pyyaml >= 6.0